Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
GFF to GTF, and GTF to GRanges objects lewewoo Bioinformatics 2 04-03-2012 02:52 PM
UCSC genes download from GTF input gokhulkrishnakilaru Bioinformatics 0 11-09-2011 07:16 AM
cufflinks -G gff/gtf format guangxiwu Bioinformatics 0 04-22-2011 09:43 AM
need help with converting VCF to GTF/GFF format rudi283 Bioinformatics 4 03-05-2011 10:49 AM
GFF to GTF gen2prot Bioinformatics 9 12-14-2010 10:07 AM

Thread Tools
Old 11-20-2010, 07:55 PM   #1
Location: san diego

Join Date: Jul 2008
Posts: 35
Default UCSC genes in GTF/GFF format

Dear all,

is there a GTF 2.2. file with the UCSC genes (hg18) I could have access to ? thank you very much,

bogdan is offline   Reply With Quote
Old 11-20-2010, 08:39 PM   #2
Location: Raleigh, NC

Join Date: Feb 2010
Posts: 30

UCSC -> Tables -> Choose the genome, group, and track (Genes and e.g. RefSeq Genes) -> The trick is to set the output format to GTF.

Good luck.
wenhuang is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 07:52 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO