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  • #1

    Pipeline + test datset for RNAseq with ERCC controls?

    I'm putting together a pipeline to automate the process of analysing ERCC spike-in RNA controls in an RNAseq experiment. Just wondering if anyone is aware of publically available test datasets that could be used for this?
    e.g. an Illumina / Ion torrent /454 RNAseq run where the ERCC controls have been added?
    EDIT: answered my own question: just go to the SRA and search for "ERCC".
    Curious if anyone has established pipelines to automate analysis of ERCC controls?
    Last edited by danwiththeplan; 03-10-2013, 02:03 PM.
    Tags: controls, ercc, ion torrent, rna
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