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Old 01-23-2017, 10:28 PM   #1
monish
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Default Gatk

how to install GATK through terminal in ubuntu?
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Old 01-24-2017, 01:29 AM   #2
vivek_
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The GATK distribution is a jar file, it should run if you have java installed.
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Old 01-24-2017, 03:34 AM   #3
wdecoster
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The information you are looking for can be found here: https://software.broadinstitute.org/...quickstart.php
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Old 01-25-2017, 01:37 AM   #4
monish
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Default Gatk

can i input .sam file to GATK in linux??
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Old 01-25-2017, 03:55 AM   #5
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GATK is one of the best documented software in Bioinformatics, are you even making an effort to go to their webpage and reading tutorials or documentation?

Last edited by vivek_; 01-25-2017 at 05:35 AM.
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Old 01-25-2017, 07:15 AM   #6
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Quote:
Originally Posted by vivek_ View Post
GATK is one of the best documented software in Bioinformatics, are you even making an effort to go to their webpage and reading tutorials or documentation?
But reading is hard and takes time, therefore it's easier to just ask people who volunteer online to help and waste their time instead.
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Old 02-07-2017, 02:58 AM   #7
monish
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Default error while running

when ever i try to run "java -jar GeomeAnalysis.jar" its showing "unable to access jarfile GenomeAnalysisTK.jar" but when i use "java $GATK -h" gatk environment is coming..please help me in running the tool
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