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Old 08-22-2011, 12:45 PM   #1
Location: Baltimore MD

Join Date: Jun 2011
Posts: 18
Post samtools varFilter options

Can anyone explain the exact parsing of varFilter options -d, -D, -G, and -Q during the varFilter step of pileup in samtools? The documentation is a bit hazy...
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Old 11-28-2012, 12:09 PM   #2
Location: Maryland, USA

Join Date: May 2012
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I came here wondering the same thing, did you ever find a good source?
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samtools, varfilter

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