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Old 11-04-2011, 07:03 AM   #1
Junior Member
Location: Canada

Join Date: Oct 2011
Posts: 3
Default Is there a program to error check / clean up FASTQ files?

Is there a program to error check / clean up FASTQ files?

All the programs I have tried for a denovo assembly have failed.
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Old 11-04-2011, 07:29 AM   #2
Rick Westerman
Location: Purdue University, Indiana, USA

Join Date: Jun 2008
Posts: 1,104

Try FastQC -- it should give you a feeling about various parameters (quality, length, etc.) of your fastq file.
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