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Old 08-07-2014, 03:03 PM   #1
Location: Canada, Quebec

Join Date: Apr 2012
Posts: 53
Default fasta35 VS fasta36


I need to use, for a specific job, fasta35 and not fasta36. However, the result is clearly not the same between both.

fasta35 gives only 1 alignment:

while fasta36 gives 3 alignments:

What I'm doing wrong with fasta35? It is probably not normal that it misses almost 2 perfect alignments on 3.

Thank you!
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Old 08-08-2014, 12:05 AM   #2
Peter (Biopython etc)
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543

This is a new feature in fasta36

P.S. This question is a duplicate of a BioPerl mailing list thread where Chris gave a more detailed answer:

Last edited by maubp; 08-08-2014 at 12:07 AM. Reason: Added link
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