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Old 07-22-2015, 05:07 AM   #1
ewhameta2015
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Location: Korea

Join Date: Jul 2015
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Default multi-sample 16S Illumina metagenome analysis in Galaxy

Dear Experts !!

I want to use Galaxy to analyze Illumina 16S metagenome data, which is ~200 fastq files, paired-end reads (meaning 100 samples), in 2 groups.

Basically, I'd like to identify microorganims that are differentially abindant (?) in one of the 2 groups (healthy vs disease).

Since I am not good at all with Unix, I want to use galaxy on the web.

I can not find any recent Galaxy example/history/work-flow that starts from importing multi samples to the final analysis.
I am very new to NGS in general.
Would appreciate your advice.
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Old 07-22-2015, 12:50 PM   #2
maubp
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Try searching for metagenetics since this is not metagenomics (you are looking at many versions of one gene, not many different genomes).
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