Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Multi-sample vs Single sample SNP calling for Linkage analysis meher Bioinformatics 0 10-23-2013 06:13 AM
16s analysis for one sample litali Bioinformatics 5 10-23-2013 04:19 AM
galaxy - illumina data analysis geneart Bioinformatics 4 10-07-2012 03:06 AM
16S metagenome sequencing directions(F/R) jiaco 454 Pyrosequencing 12 01-26-2012 02:39 PM
Large-Scale, Multi-Sample SNP Analysis Video DNASTAR Vendor Forum 0 10-26-2011 08:11 AM

Thread Tools
Old 07-22-2015, 05:07 AM   #1
Junior Member
Location: Korea

Join Date: Jul 2015
Posts: 2
Default multi-sample 16S Illumina metagenome analysis in Galaxy

Dear Experts !!

I want to use Galaxy to analyze Illumina 16S metagenome data, which is ~200 fastq files, paired-end reads (meaning 100 samples), in 2 groups.

Basically, I'd like to identify microorganims that are differentially abindant (?) in one of the 2 groups (healthy vs disease).

Since I am not good at all with Unix, I want to use galaxy on the web.

I can not find any recent Galaxy example/history/work-flow that starts from importing multi samples to the final analysis.
I am very new to NGS in general.
Would appreciate your advice.
ewhameta2015 is offline   Reply With Quote
Old 07-22-2015, 12:50 PM   #2
Peter (Biopython etc)
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543

Try searching for metagenetics since this is not metagenomics (you are looking at many versions of one gene, not many different genomes).
maubp is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 07:17 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO