Hi guys,
I've got a load of RNA-Seq .txt files that I need to trim and filter. The files are very large (>12GB) and I have a lot of different controls etc, and I was wondering if there was a simple script that someone could help me with to perform the same action on multiple files and specify a unique output name.
I imagine a for loop saying 'for every file ending in .txt run fastq_quality_trimmer and save as a .fastq file' would do this, but I'm not too sure how to go about writing it.
Any help would be appreciated,
Thanks a lot,
Nick
I've got a load of RNA-Seq .txt files that I need to trim and filter. The files are very large (>12GB) and I have a lot of different controls etc, and I was wondering if there was a simple script that someone could help me with to perform the same action on multiple files and specify a unique output name.
I imagine a for loop saying 'for every file ending in .txt run fastq_quality_trimmer and save as a .fastq file' would do this, but I'm not too sure how to go about writing it.
Any help would be appreciated,
Thanks a lot,
Nick
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