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07-10-2012, 06:18 PM
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Junior Member
Location: England Join Date: Jul 2012
Posts: 2
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how to get quality information from VarScan mpileup2snp
So, I know you can get map and base quality information as output when running varscan pileup2snp, but why don't you get this output when running mpileup2snp?
I see it says, for MapQual1 and MapQual2 'only useful if in pileup' but I don't understand. Why can't I get this information from a multi sample pileup? Thank you. |
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