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Old 08-31-2009, 06:53 AM   #1
RockChalkJayhawk
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Location: Rochester, MN

Join Date: Mar 2009
Posts: 191
Default Wierd MACS error

Hey all,

I am trying to install MACS, but I get this error:
$ python setup.py install
/usr/lib/python2.6/distutils/dist.py:266: UserWarning: Unknown distribution option: 'console'
warnings.warn(msg)
/usr/lib/python2.6/distutils/dist.py:266: UserWarning: Unknown distribution option: 'app'
warnings.warn(msg)
running install
running build
running build_py
running build_scripts
running install_lib
running install_scripts
changing mode of /usr/local/bin/elandmulti2bed.py to 755
changing mode of /usr/local/bin/elandresult2bed.py to 755
changing mode of /usr/local/bin/macs to 755
running install_egg_info
Removing /usr/local/lib/python2.6/dist-packages/MACS-1.3.6.1.egg-info
Writing /usr/local/lib/python2.6/dist-packages/MACS-1.3.6.1.egg-info

Then when I try to run MACS, I only get the help screen.

I am running 64-bit Ubuntu (jaunty) on a dual core AMDx64 with 4GB memory.

Any ideas?
Thanks in advance!
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Old 08-31-2009, 07:22 AM   #2
dawe
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Default

Hi

Quote:
Originally Posted by RockChalkJayhawk View Post
Hey all,

I am trying to install MACS, but I get this error:
$ python setup.py install
/usr/lib/python2.6/distutils/dist.py:266: UserWarning: Unknown distribution option: 'console'
warnings.warn(msg)
/usr/lib/python2.6/distutils/dist.py:266: UserWarning: Unknown distribution option: 'app'
warnings.warn(msg)
These are only py2.6 warnings, no errors... MACS should be running fine.

Quote:
Originally Posted by RockChalkJayhawk View Post
Then when I try to run MACS, I only get the help screen.
Well, that's exactly how MACS works! :-)
No options -> help printed
You will need to specify your options to get some results (i.e. at least the "treatment" file).

d
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Old 08-31-2009, 07:26 AM   #3
RockChalkJayhawk
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Location: Rochester, MN

Join Date: Mar 2009
Posts: 191
Default

I did give it options
~/Desktop/MACS$ macs s_7_output.bed --wig

The bed file is in the MACS directory
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Old 08-31-2009, 07:30 AM   #4
dawe
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Default

Quote:
Originally Posted by RockChalkJayhawk View Post
I did give it options
~/Desktop/MACS$ macs s_7_output.bed --wig

The bed file is in the MACS directory
you need to specify the treatment with the -t option, i.e.

Code:
macs -t s_7_output.bed
d
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Old 08-31-2009, 07:31 AM   #5
RockChalkJayhawk
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Location: Rochester, MN

Join Date: Mar 2009
Posts: 191
Default

wow...I am stupid.

That's what I get for doing any work on Mondays.

Thanks d. It's running now
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Old 08-31-2009, 07:36 AM   #6
dawe
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Nevermind :-)

After all I also think that monday is not a good day to work... http://www.youtube.com/watch?v=TCsbnW91CGc

:-)
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