Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
GATK: sorting vcf file given a reference file jorge Bioinformatics 4 01-14-2015 01:16 PM
UnifiedGenotyper between tumor and normal kasthuri Bioinformatics 3 07-21-2012 09:47 AM
why the vcf has so little high_quality bases mapping on the reference? wswill Bioinformatics 3 12-13-2011 11:05 AM
GATK UnifiedGenotyper calling way too many SNPs in vcf swbarnes2 Bioinformatics 0 08-17-2011 02:33 PM
VCFtools problem - broken VCF header on 1000genomes data Bioinformatics 1 07-08-2011 05:17 AM

Thread Tools
Old 06-09-2011, 05:31 AM   #1
Location: United States

Join Date: Jun 2011
Posts: 36
Default VCF Reference in UnifiedGenotyper.

What role does VCF reference in UnifiedGenotyper play? i.e, the parameter, -B: dbsnp,VCF /path/to/VCF file
I mean is it used for just annotation purposes or some sort of validation of SNP's as well?
kasthuri is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 02:01 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO