Where can I get intron exon juntion information (splice site)?

tmy1018 · 07-10-2011, 08:13 AM

Hi,

I am a newbie to bioinformatics, so please correct me if I make any mistakes.

Right now I want to get sequence data of different genes, I believe that this available from GenBank and UCSC Genome Browser. But I don't know where I can get information about the intron, exon information (where the splice sites are).

Can somebody tell me where I can find the information I need?

Thanks!

kwatts59 · 07-10-2011, 11:44 AM

This link on the UCSC website may help
http://hgdownload.cse.ucsc.edu/golde...hg19/database/

File exoniphy.sql

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
where to find coordinates for promter, splice site, splice regulatory site?	cliff	Bioinformatics	13	11-18-2013 06:23 PM
Finding Exon-Intron Junctions without a reference genome	brachysclereid	Bioinformatics	3	05-22-2011 07:21 AM
Length exon, intron, promoter and intergenic regions in human genome	khb	Bioinformatics	1	01-17-2011 02:03 PM
Human exon, intron and promotor bedfile	khb	Bioinformatics	1	12-22-2010 06:47 AM
How to know the definite splice-site	zilang1023	Bioinformatics	3	11-25-2009 12:08 AM

07-10-2011, 08:13 AM	#1
tmy1018 Member Location: Beijing Join Date: Feb 2011 Posts: 10	Where can I get intron exon juntion information (splice site)? Hi, I am a newbie to bioinformatics, so please correct me if I make any mistakes. Right now I want to get sequence data of different genes, I believe that this available from GenBank and UCSC Genome Browser. But I don't know where I can get information about the intron, exon information (where the splice sites are). Can somebody tell me where I can find the information I need? Thanks!

07-10-2011, 11:44 AM	#2
kwatts59 Member Location: nevada Join Date: Apr 2011 Posts: 46	This link on the UCSC website may help http://hgdownload.cse.ucsc.edu/golde...hg19/database/ File exoniphy.sql