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Old 08-26-2011, 02:02 AM   #1
Location: India

Join Date: Apr 2011
Posts: 14
Default Rank In Soap denovo

Dear all,
I am trying to use soap denovo tool for my large data assembly.
I have some doubts regarding that..
  • what is rank in config file
  • can we run multiple Kmers in a single run..??
  • Number of iterations it will follow..?? If it more than one, can we specify..??
  • can we specify minimum contig size needed in the output..??
sivasubramani is offline   Reply With Quote
Old 08-31-2011, 11:05 PM   #2
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Location: SF Bay Area, CA, USA

Join Date: Oct 2007
Posts: 1,358

Totally wrong place for this post. Apologies for not seeing it sooner. Welcome to the site, feel free to repost this in either the de novo forum or the Bioinfx forum.
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