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Old 08-31-2011, 07:14 PM   #1
dknguyen
Junior Member
 
Location: Seattle

Join Date: Aug 2011
Posts: 1
Unhappy RNAseq with solid fasq.

Hi everyone, I am new at Galaxy website as well as NGS. My primary work is to analyze gene expression using RNA-seq. I downloaded fasq files from ENAa, uploaded them into galaxy using ftp, mapped them using bowtie for solid and this is where I got lost.

HOW do I get fpkm or rpkm from these files? Please help

Thank you very much
Di Nguyen, postdoc
U of Washington, WA
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