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Old 10-04-2011, 01:51 PM   #1
Location: Hoboken, NJ

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Default DNA Alignmet Algorithms- Online Alignment Tools


I'm working on my thesis and it is about the comparison of DNA Alignment Algorithms. I need to find websites that has software running these Alignment algorithms.
Would you suggest Online Alignment Software that I can reach ?

Thank you in advance..
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Old 10-05-2011, 12:36 AM   #2
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Bob Edgar who wrote Muscle did a lot of benchmarking. Its somewhere on his website or blog ->
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Old 10-05-2011, 06:14 AM   #3
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T-coffee is available on several servers

I have not used them in years, but CLUSTALW servers should be available at the Pasteur Inst., EMBL, and likely others as well.
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