Get allele frequencies for specific coordinates from a .bam file

mehc · 10-28-2011, 12:57 PM

Hi,

I want to extract allelic frequencies for a list of coordinates directly from a .bam file

Any tools out there doing that?

Thank you

Richard Finney · 10-28-2011, 01:05 PM

check out samtools

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10-28-2011, 12:57 PM	#1
mehc Member Location: Montreal Join Date: Aug 2011 Posts: 10	Get allele frequencies for specific coordinates from a .bam file Hi, I want to extract allelic frequencies for a list of coordinates directly from a .bam file Any tools out there doing that? Thank you

10-28-2011, 01:05 PM	#2
Richard Finney Senior Member Location: bethesda Join Date: Feb 2009 Posts: 700	check out samtools