clustering paired-end reads

rwenang · 02-01-2011, 12:12 AM

Hi Guys,

Anybody can tell me which tools to use for paired-end reads clustering?
In addition, I would like to do the clustering for 5 different datasets.

I looked through UCLUST and CD-HIT, and none of them mentioned paired-end clustering, or multi dataset clistering.

seb567 · 02-03-2011, 08:13 AM

According to which criterion do you want the grouping process to be executed ?

rwenang · 02-06-2011, 08:15 PM

it will be a simple identity match (97%).

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02-01-2011, 12:12 AM	#1
rwenang Member Location: Singapore Join Date: Jan 2009 Posts: 31	clustering paired-end reads Hi Guys, Anybody can tell me which tools to use for paired-end reads clustering? In addition, I would like to do the clustering for 5 different datasets. I looked through UCLUST and CD-HIT, and none of them mentioned paired-end clustering, or multi dataset clistering.

02-03-2011, 08:13 AM	#2
seb567 Senior Member Location: Québec, Canada Join Date: Jul 2008 Posts: 260	According to which criterion do you want the grouping process to be executed ?

02-06-2011, 08:15 PM	#3
rwenang Member Location: Singapore Join Date: Jan 2009 Posts: 31	it will be a simple identity match (97%).