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Old 02-21-2011, 02:00 PM   #1
Autotroph
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Location: Europe

Join Date: Oct 2010
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Default SOAP denovo output to AFG format

Hi,

Soap denovo gives out scaffold sequences with "N's" in place of gaps.

Is anybody aware of a script or tool to convert it to .afg format?

toAMOS just converts fasta files or mate files. I am looking for something that coverts the scaffolds into .afg without having to generate the mate files.

Thanks
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