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  • Bowtie: building from source

    I'm trying to get bowtie running, and the manual just says to go to the directory and type "make", but I keep getting an error message. Can somebody help me figure out what I should do? Thanks!


    bowtie-0.12.7 ericca$ make
    make: *** No targets specified and no makefile found. Stop.

  • #2
    Nevermind. I think bowtie is running fine. Now it's another problem.

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    • #3
      Originally posted by ericca View Post
      I'm trying to get bowtie running, and the manual just says to go to the directory and type "make", but I keep getting an error message. Can somebody help me figure out what I should do? Thanks!


      bowtie-0.12.7 ericca$ make
      make: *** No targets specified and no makefile found. Stop.
      Hi ericca, What was the solution? I am a beginner with bowtie and have come across the same problem.

      Thanks,
      tonge

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      • #4
        It was just a matter of having the files in the correct directories.

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        • #5
          Hi, Ericca, I got the same message. so what file need to be in which directory? Thanks!

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          • #6
            Hi ericca,

            I am having the same problem you first had. Could you please explain the following in more detail?

            Originally posted by ericca View Post
            It was just a matter of having the files in the correct directories.
            I tried installing it on my local machine and server (both Linux). Both seemed to give the same error when I 'make'... I am pretty sure I am using the right version for the right distribution.

            Thanks!

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            • #7
              Check this out.

              Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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