Greetings, I am new to assembly please bear with me .
Question: Is Mira or Velvet compatible with Solexa.abi.contigs and 454 reads?
Input:
ch_abi_contigs.fa
No of Sequences = 2527
Total Sequence Length = 10686451
ch_454_reads.fa
No of Sequences = 400440
Total Sequence Length = 102044021
Results:
Velvet output:
No of Sequences = 9142
Total Sequence Length = 9162684
Mira output
None
* returns preprossing outputs with the –output parameter but no shorter contigs are observed. abi data is used as a backbone to the 454 sequence data.
-Jordy
Question: Is Mira or Velvet compatible with Solexa.abi.contigs and 454 reads?
Input:
ch_abi_contigs.fa
No of Sequences = 2527
Total Sequence Length = 10686451
ch_454_reads.fa
No of Sequences = 400440
Total Sequence Length = 102044021
Results:
Velvet output:
No of Sequences = 9142
Total Sequence Length = 9162684
Mira output
None
* returns preprossing outputs with the –output parameter but no shorter contigs are observed. abi data is used as a backbone to the 454 sequence data.
-Jordy
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