Hi,
I'm working on a genome project where a primary assembly was computed with 454 GS de novo Assembler ('Newbler') and later enhanced with Sanger reads to close some simple gaps.
For the secondory assembly, Gap4 was used with the reads from the Sanger sequencing and the contigs from Newbler as as plain Fasta-sequence files input.
Is there some way to retrieve a visualization that shows the mapping of both Sanger and 454 reads vs. the contigs from the secondory assembly?
Apparently the best start would be the Consed .ace file produced by Newbler?
Greetings, Thomas
I'm working on a genome project where a primary assembly was computed with 454 GS de novo Assembler ('Newbler') and later enhanced with Sanger reads to close some simple gaps.
For the secondory assembly, Gap4 was used with the reads from the Sanger sequencing and the contigs from Newbler as as plain Fasta-sequence files input.
Is there some way to retrieve a visualization that shows the mapping of both Sanger and 454 reads vs. the contigs from the secondory assembly?
Apparently the best start would be the Consed .ace file produced by Newbler?
Greetings, Thomas
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