I have made BAM files using canfam3 as a reference.
Then I am getting this error when using picard/BuildBamIndex
Exception in thread "main" net.sf.samtools.util.RuntimeEOFException: Premature EOF; BinaryCodec in readmode;
and using samtools I get:
[bam_header_read] EOF marker is absent. The input is probably truncated.
The weird thing is this doesn't happen when I create the BAM file using the canfam2 dog sequence as reference, but it does happen when using the canfam3 sequence as reference.
Then I am getting this error when using picard/BuildBamIndex
Exception in thread "main" net.sf.samtools.util.RuntimeEOFException: Premature EOF; BinaryCodec in readmode;
and using samtools I get:
[bam_header_read] EOF marker is absent. The input is probably truncated.
The weird thing is this doesn't happen when I create the BAM file using the canfam2 dog sequence as reference, but it does happen when using the canfam3 sequence as reference.
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