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ChIP-Seq: Systematic identification of conserved motif modules in the human genome. Newsbot! Literature Watch 0 10-16-2010 02:00 AM

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Old 03-29-2019, 07:20 AM   #1
yueli
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Default which one is best for motif discobery in human paired-ends chip-seq?

Hello,

I am working on human paired-ends chip-seq data analysis.

Which software or web tools is the best for motif discovery?

Thanks in advance!

With Best!

Yue
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Old 03-30-2019, 01:08 AM   #2
atpoint
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findMotifs.pl from Homer and MEME-ChIP from the MEME suite are the two most popular. Check out both and then choose the one you feel more comfortable with. I typically use homer as it is quiet intuituive to use.
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Old 03-31-2019, 10:22 AM   #3
yueli
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atpoint,

Thank you so much for your great help!
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