Dear all,
I am doing a 16S-metagenome project with paired-end reads. I used join_paired_end.py from Qiime. There are around 5000 reads fail to join. I think it is a big set to remove from analysis. I want to understand how to use these un join reads for analysis.
Command i am using is:
join_paired_ends.py -f forward.fastq -r reverse.fastq -o join_output -j 1
Manjari
I am doing a 16S-metagenome project with paired-end reads. I used join_paired_end.py from Qiime. There are around 5000 reads fail to join. I think it is a big set to remove from analysis. I want to understand how to use these un join reads for analysis.
Command i am using is:
join_paired_ends.py -f forward.fastq -r reverse.fastq -o join_output -j 1
Manjari