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  • Bioinformatics Programmer for Metagenomics Center - University of Oregon

    The University of Oregon is looking for a bioinformatics programmer for their new metagenomics center. Details here: http://jobs.uoregon.edu/unclassified.php?id=4237

    I have worked here a year as a general scientific programmer, and it a really great group of people to work with.

    Responsibilities include:
    • Consultation with individual researchers on methods for analyzing large data sets generated by Illumina sequencers in the UO’s Genomics Core Facility or sequence data from other sources
    • Help researchers develop data management strategies for all stages of the data “life cycle”: transferring data from sequencing centers to ACISS (our local cluster) or other computational resources, passing it through a variety of analysis pipelines, publishing results, and arranging for long term archival storage
    • Design and implement new techniques for analyzing bioinformatics data.
    • Use programming expertise, graphics, and technology tools to present data in ways that are accurate, innovative, accessible, and appealing
    • Provide education and training to faculty, postdocs, and graduate students on basic tools and techniques in bioinformatics
    • Participate in the planning process for acquisition of new computational and storage infrastructure

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  • seqadmin
    Current Approaches to Protein Sequencing
    by seqadmin


    Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
    04-04-2024, 04:25 PM
  • seqadmin
    Strategies for Sequencing Challenging Samples
    by seqadmin


    Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
    03-22-2024, 06:39 AM

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