We recently sequenced a couple bacterical genomes on our MiSeq after making Nextera XT libraries. After assembling we discovered a PhiX-Sequence containing contig within an assembly. We wonder if this might be contamination.
Has anyone else discovered PhiX reads among de-multiplexed reads from a MiSeq Run?
Has anyone else discovered PhiX reads among de-multiplexed reads from a MiSeq Run?
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