Hello,
I'm trying to produce 2 fastq files from a bam file with
but the resulting files don't have matching reads. Some reads in reads1 don't have pairs in reads2 and vice-versa. Is there a solution?
Thanks.
I'm trying to produce 2 fastq files from a bam file with
Code:
samtools fastq -1 reads1.fastq -2 reads2.fastq
Thanks.
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