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  • Error when using SRA toolkit on server

    Hello everyone,

    I am having a bit of a problem using the SRA toolkit on the external server i use. I've downloaded it using the command line installation available on their website, gunzip-ed and tar-ed it to extract the directory, and edited my path to include the bin within the directory.

    Then, when i try to run fastq-dump this happens:

    User$ fastq-dump --split-files MySRA.sra
    -bash: /home/Programs/SRAtools_Linux/bin/fastq-dump: Invalid argument


    This also occurs when i just try to run the help tool

    User$ fastq-dump --help
    -bash: /home/Programs/SRAtools_Linux/bin/fastq-dump: Invalid argument


    Can someone please help me?

    Thank you

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