Hi
I am using Varscan for calling somatic SNPs and Indels and Annovar for annotation. However for indels the way it represents reference allele is 1 base upstream of the actual insertion/deletion. Is there a way to convert it to the annovar input format ?
thanks
Rahul
I am using Varscan for calling somatic SNPs and Indels and Annovar for annotation. However for indels the way it represents reference allele is 1 base upstream of the actual insertion/deletion. Is there a way to convert it to the annovar input format ?
thanks
Rahul
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