Hi I'm curating a database and I'm having trouble with a paper with ChIP-seq raw data. I have the MACS output for peak calling and the corresponding "target genes", but I'm only interested in peaks that fall within gene promoters, and that is not indicated. Is there a tool that, when I use the full MACS output, or only the chromosome / start / end columns, tells me where that sequence interval falls?
Please help!
The format is like this:
chr start end length summit tags -10*log10(pvalue) fold_enrichment FDR(%)
chr01.fs 20885 20948 64 31 28 76.41 5.85 52.94
chr01.fs 62827 62973 147 83 55 61.56 3.14 68.85
Please help!
The format is like this:
chr start end length summit tags -10*log10(pvalue) fold_enrichment FDR(%)
chr01.fs 20885 20948 64 31 28 76.41 5.85 52.94
chr01.fs 62827 62973 147 83 55 61.56 3.14 68.85
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