We would like to use 6-8 of the 12 tags per lane available for Solexa sequencing. Has someone looked at 'what 6 of the 12 tags would be least interfering?' in order to get the most efficient results?
In other words, for a lane sequenced using 6 tags, there are reads that map to the other 6 tags as well (I allow 1 mis-match). So does using a particular set of those 6 tags make this cross-match less likely?
Cheers,
sm
In other words, for a lane sequenced using 6 tags, there are reads that map to the other 6 tags as well (I allow 1 mis-match). So does using a particular set of those 6 tags make this cross-match less likely?
Cheers,
sm
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