Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
how to check copy number from certain gene cliff Bioinformatics 2 07-14-2014 03:52 PM
gene copy number -k parameter afadda Genomic Resequencing 1 07-14-2014 02:36 PM
Gene Copy Number AdrianP Bioinformatics 12 02-23-2014 06:32 PM
exome copy number and LOH rcorbett Bioinformatics 20 11-26-2013 01:22 AM
A question regarding copy number variation JackieBadger Bioinformatics 0 07-16-2012 05:11 AM

Thread Tools
Old 04-24-2014, 03:18 AM   #1
Manoeli Lupatini
Junior Member
Location: Wageningen

Join Date: Apr 2014
Posts: 1
Default Deseq2 16S copy number

Hello everyone,

I am working with 16S and I correct the 16S copy number using picrust (only firts step). The result table are not integer values but decimal numbers. I want to use DESeq2 to normalize my counts by size factors, but the input of DESeq2 must be integer values and DESeq2 warns to not rounded normalized counts.
Any help to mix the use of 16S copy number and DESeq2?
Manoeli Lupatini is offline   Reply With Quote
Old 04-26-2014, 04:05 AM   #2
Wolfgang Huber
Senior Member
Location: Heidelberg, Germany

Join Date: Aug 2009
Posts: 109

See the thread on the Bioconductor list, (cross-post)
Wolfgang Huber
Wolfgang Huber is offline   Reply With Quote

16s copy number deseq2

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 12:46 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO