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Old 11-16-2011, 04:49 PM   #1
lixiangru
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Default quality problem when mapping with gMap

Hi,all!
Does gmap account for the sequencing quality when mapping?
It seems that no argument is for the quality file when the cDNA file is in fasta format. So I wonder whether gmap account for the base quality when do mapping.
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Old 11-16-2011, 06:40 PM   #2
lixiangru
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Quote:
Originally Posted by lixiangru View Post
Hi,all!
Does gmap account for the sequencing quality when mapping?
It seems that no argument is for the quality file when the cDNA file is in fasta format. So I wonder whether gmap account for the base quality when do mapping.

I guess quality information is not used at all by gMap when do mapping after i finished such related manuals.
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