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Old 04-02-2013, 04:56 AM   #1
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Location: Barcelona

Join Date: Oct 2012
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Default Annotate 1K Genomes allele frequencies in a vcf file

Hi everyone,

I want to make you a question although maybe it is really simple and easy:
I'm working with exome sequencing. How do I annotate the 1k genomes allele frequencies for the different populations (AFR, EUR, ...) in my vcf file?
I use GATK and I suppose it is done in one of the steps but I'm unable to find where or when. Could you please help me? I'm pretty desperate here

Thank you!

Last edited by Elurbe; 04-03-2013 at 12:07 PM.
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allele frequency, exome sequencing, gatk, maf, vcf

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