Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
FASTX Toolkit barcode splitter issue jdanderson Bioinformatics 36 01-31-2016 07:09 PM
How to pair mates after de-barcoding by fastx BarCode splitter? abyss Bioinformatics 7 11-14-2014 07:24 AM
fastX barcode splitter mjose23 Introductions 2 10-17-2013 12:53 AM
Barcode splitter error on Galaxy nilmot13 Bioinformatics 3 03-25-2013 09:22 AM
Barcode splitter - for paired end reads & specifiy prefix in output file spoonman Bioinformatics 2 08-10-2011 04:54 PM

Thread Tools
Old 11-15-2015, 06:58 AM   #1
Location: milan

Join Date: Jul 2015
Posts: 26
Default Barcode splitter

I am trying to use fastx barcode splitter, but I do not understand if with the option "partial matching " I can allow indel inside the read.
How does the tool count the mismatches? Does the tool use the Levenshtein distance?
Thank you very much in advance
best regards
pingu is offline   Reply With Quote
Old 11-17-2015, 07:08 AM   #2
Senior Member
Location: Berlin, DE

Join Date: May 2008
Posts: 628

It uses the hamming distance.
sklages is offline   Reply With Quote

barcode splitter, indel, mismatches

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 07:26 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO