SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
DESeq2 - varianace stabilized pseudocounts and PCA plot KHubbard Bioinformatics 1 11-05-2013 03:35 AM
cummeRbund MDS/PCA gene list jake13 Bioinformatics 1 08-30-2013 12:39 AM
meaning of DESeq PCA plot axis? mbk0asis Bioinformatics 4 08-27-2013 12:56 AM
Help with how to interpret density plot (cummeRbund) DonDolowy RNA Sequencing 4 07-19-2013 03:33 AM
CummeRbund (csVolcano plot) question prios RNA Sequencing 5 07-01-2013 04:22 PM

Reply
 
Thread Tools
Old 04-15-2014, 02:08 PM   #1
glados
Member
 
Location: Aperture Science

Join Date: Mar 2012
Posts: 59
Default cummeRbund PCA plot

Can anyone explain cummeRbund's PCA plot?
I do understand traditional PCA plots, like the one in DESeq, and cummeRbund's MDS plot, but what does everything in cummeRbund's PCA version mean? What are the dots (PCA loading factors or expression values?), and what are the arrows? (There is no explanation in the manual)
glados is offline   Reply With Quote
Reply

Tags
cummerbund, cummerbund 2, pca, pca plot

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 03:37 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO