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Old 04-21-2014, 11:15 AM   #1
lizzi
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Location: Minnesota

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Default Annotation of multiple bacterial genomes

Hi,
I would like to annotate a subset of the Human Microbiome Project Reference Database http://www.hmpdacc.org/HMREFG/
and am wondering if anyone has any advice as to the best (and reasonably fast) system to use for annotating multiple bacterial genomes. There are just over 2000 FASTA sequences (~2.3 Gb) - some are complete genomes, and some are scaffolds.

Thanks!
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Old 04-22-2014, 05:01 AM   #2
TiborNagy
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RAST is an online tool for bacterial genome annotation.
PROKKA also a great tool.
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