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Old 04-21-2014, 11:15 AM   #1
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Default Annotation of multiple bacterial genomes

I would like to annotate a subset of the Human Microbiome Project Reference Database
and am wondering if anyone has any advice as to the best (and reasonably fast) system to use for annotating multiple bacterial genomes. There are just over 2000 FASTA sequences (~2.3 Gb) - some are complete genomes, and some are scaffolds.

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Old 04-22-2014, 05:01 AM   #2
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RAST is an online tool for bacterial genome annotation.
PROKKA also a great tool.
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genome annotation

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