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Old 01-24-2018, 12:25 PM   #1
Junior Member
Location: Gainesville Florida

Join Date: Jan 2018
Posts: 1
Default Issue Exporting Blast Data

Hi Everyone,

I recently started working with the blast command line, and I seem to have hit a road block.

My directories look like this blast -> dbs, out, query
I loaded my ncbi_blast using [module load ncbi_blast]

Then I ran it using the command line [makeblastdb -in Zfish -dbtype prot]

Inside of the dbs folder I have a unpacked files called Zfish, Zfish.phr,, Zfish.psq

My question is how do I make this Zfish blast result file into a .html file in the out folder? I want to be able to extract it using FileZilla once it is done. I tried running [$ makeblastdb -in Zfish -dbtype prot -out Zfish.html] but all it made was the same files with a .html prefix.

Please let me know if you have a solution to this issue. Any advice will be greatly appreciated.
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