I'm not sure I follow.
Here is my prep_reads.info file for one of my samples. This one is 396,555 base pairs:
left_min_read_len=251
left_max_read_len=251
left_reads_in =396555
left_reads_out=396555
right_min_read_len=251
right_max_read_len=251
right_reads_in =396555
right_reads_out=396555
Now here is a prep_reads.info file for a sample from another study that actually produces near perfect alignment:
left_min_read_len=20
left_max_read_len=50
left_reads_in =33601862
left_reads_out=33599795
right_min_read_len=20
right_max_read_len=50
right_reads_in =33601862
right_reads_out=33599859
The only difference seems to be the read length?
Here is my prep_reads.info file for one of my samples. This one is 396,555 base pairs:
left_min_read_len=251
left_max_read_len=251
left_reads_in =396555
left_reads_out=396555
right_min_read_len=251
right_max_read_len=251
right_reads_in =396555
right_reads_out=396555
Now here is a prep_reads.info file for a sample from another study that actually produces near perfect alignment:
left_min_read_len=20
left_max_read_len=50
left_reads_in =33601862
left_reads_out=33599795
right_min_read_len=20
right_max_read_len=50
right_reads_in =33601862
right_reads_out=33599859
The only difference seems to be the read length?
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