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Old 02-15-2015, 01:23 AM   #1
man4ish
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Location: OK

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Default How to annotate vcf file using annovar?

Hi,

How can i annotate vcf file using Annovar?

I used following command but i found no output and all input goes to invalid file.

perl annotate_variation.pl -buildver hg19 ../input.vcf humandb/

Do i need to add some prefix in command?
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Old 02-15-2015, 03:54 AM   #2
lindenb
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cross-posted https://www.biostars.org/p/131099
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Old 02-15-2015, 05:30 AM   #3
GenoMax
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Have you gone through the example at the top of the page with the test data: http://www.openbioinformatics.org/an...r_startup.html
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