Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Accession Numbers when publishing fibar General 7 05-15-2015 01:10 PM
Blast from accession number fefe89 Bioinformatics 4 08-11-2014 01:08 AM
Entrez ID for GAGE Parharn Bioinformatics 5 06-11-2014 06:30 AM
where are the accession numbers? Joann General 4 06-10-2014 06:22 AM
NCBI releases Entrez Direct, the Entrez utilities on the UNIX command line rhinoceros Bioinformatics 2 02-11-2014 03:39 AM

Thread Tools
Old 04-02-2016, 03:47 PM   #1
Junior Member
Location: OK

Join Date: Jan 2010
Posts: 7
Default Can't extract experiment accession using entrez query


I am trying to use following query but i could not get this.

esearch -db SRA -query "biomol rna [PROP] AND Homo sapiens [orgn:__txid9606] AND (RNA-seq or rnaseq)" | efetch -format xml | xtract -pattern EXPERIMENT_PACKAGE -block EXTERNAL_ID -match "@namespace:BioSample" -tab "\n" -element EXTERNAL_ID -match EXPERIMENT@accession -tab "\n" -element EXPERIMENT


Unrecognized argument '-match'
No -element before 'EXPERIMENT@accession'
Unrecognized argument '-match'
No -element before 'EXPERIMENT@accession'
man4ish is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 04:11 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO