what wrong with boost?

feng · 06-23-2011, 01:58 PM

if g++ -DHAVE_CONFIG_H -I. -I. -I../../src -Iincludes -Itinyxml -I/usr/include -DTIXML_USE_STL -fno-strict-aliasing -fPIC -Wall -Werror -I/usr/include -O3 -MT libsrf_a-common.o -MD -MP -MF ".deps/libsrf_a-common.Tpo" -c -o libsrf_a-common.o `test -f 'src/common.cpp' || echo './'`src/common.cpp; \
then mv -f ".deps/libsrf_a-common.Tpo" ".deps/libsrf_a-common.Po"; else rm -f ".deps/libsrf_a-common.Tpo"; exit 1; fi
src/common.cpp: In constructor 'SRFContainer::SRFContainer(SRFFile*, boost::shared_array<unsigned char>, uint32_t, const std::string&, const std::string&, off_t)':
src/common.cpp:44: error: 'strlen' was not declared in this scope
make[3]: *** [libsrf_a-common.o] Error 1
make[3]: Leaving directory `/home/feng/Desktop/HD/helisphere-0.11.2/src/SRF'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/feng/Desktop/HD/helisphere-0.11.2/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/feng/Desktop/HD/helisphere-0.11.2/src'
make: *** [all-recursive] Error 1

thenitman · 07-11-2011, 02:04 PM

I am having the exact same problem, did you learn how to fix it?

Kakadua · 10-15-2011, 05:32 AM

Wondering the same thing. Is it resolved? Can anybody help? If someone can help me I'll post my current local setup when trying to compile Dindel.
// andreas

spenthil · 10-16-2011, 10:50 AM

Try adding:
#include 'string.h'
To the top of src/common.cpp. If this doesn't work, post the includes section of the problem file.

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
No expression? or wrong mapping?	sarahthefool	RNA Sequencing	0	10-26-2011 08:00 AM
something wrong when using consed	dingkai0564	Bioinformatics	0	08-25-2011 01:05 AM
What wrong about my result of Velvet	ZhigangLi	Bioinformatics	0	12-01-2010 06:23 AM
what is wrong with my MAQ?	lemon027	Bioinformatics	6	08-25-2008 07:10 PM
In Sequence: Invitrogen Could Boost SOLiD Applications, But Any Delay Could Empower C	Newsbot!	SOLiD	0	06-24-2008 03:54 PM

06-23-2011, 01:58 PM	#1
feng Member Location: US Join Date: Oct 2010 Posts: 50	what wrong with boost? if g++ -DHAVE_CONFIG_H -I. -I. -I../../src -Iincludes -Itinyxml -I/usr/include -DTIXML_USE_STL -fno-strict-aliasing -fPIC -Wall -Werror -I/usr/include -O3 -MT libsrf_a-common.o -MD -MP -MF ".deps/libsrf_a-common.Tpo" -c -o libsrf_a-common.o `test -f 'src/common.cpp' \|\| echo './'`src/common.cpp; \ then mv -f ".deps/libsrf_a-common.Tpo" ".deps/libsrf_a-common.Po"; else rm -f ".deps/libsrf_a-common.Tpo"; exit 1; fi src/common.cpp: In constructor 'SRFContainer::SRFContainer(SRFFile, boost::shared_array<unsigned char>, uint32_t, const std::string&, const std::string&, off_t)': src/common.cpp:44: error: 'strlen' was not declared in this scope make[3]: [libsrf_a-common.o] Error 1 make[3]: Leaving directory `/home/feng/Desktop/HD/helisphere-0.11.2/src/SRF' make[2]: * [all-recursive] Error 1 make[2]: Leaving directory `/home/feng/Desktop/HD/helisphere-0.11.2/src' make[1]: * [all] Error 2 make[1]: Leaving directory `/home/feng/Desktop/HD/helisphere-0.11.2/src' make: * [all-recursive] Error 1

10-16-2011, 10:50 AM	#4
spenthil Member Location: San Francisco Join Date: Sep 2009 Posts: 44	Try adding: #include 'string.h' To the top of src/common.cpp. If this doesn't work, post the includes section of the problem file. __________________ -- Senthil Palanisami

07-11-2011, 02:04 PM	#2
thenitman Junior Member Location: Worcester, MA Join Date: Jun 2011 Posts: 2	I am having the exact same problem, did you learn how to fix it?

10-15-2011, 05:32 AM	#3
Kakadua Junior Member Location: Uppsala, Sweden Join Date: Mar 2011 Posts: 3	Wondering the same thing. Is it resolved? Can anybody help? If someone can help me I'll post my current local setup when trying to compile Dindel. // andreas