SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
why consed after Newbler nicedad General 6 06-11-2011 04:21 AM
Consed would not run in 10.6 YongLi Bioinformatics 0 02-10-2011 09:21 AM
Errors using consed Mona Bioinformatics 1 09-22-2010 02:43 AM
Segmentation fault in consed michaelbarton Bioinformatics 0 06-11-2010 01:50 PM
454 assembly using consed mjleaks Bioinformatics 7 08-28-2009 03:52 AM

Reply
 
Thread Tools
Old 08-25-2011, 01:05 AM   #1
dingkai0564
Member
 
Location: lasvegas

Join Date: Nov 2010
Posts: 10
Default something wrong when using consed

when I use consed to display ace file generated by phrap one error happens:

The error is :

exception thrown: ace file error detected from source file parseAceFile.cpp at 2368
Error in file 34-9EST.out.ace at line 1736. Line:


premature end of file while expecting DS line for read

ace file: 34-9EST.out.ace
Version 20.0 (101012)
ace file error detected from source file parseAceFile.cpp at 2368
Error in file 34-9EST.out.ace at line 1736. Line:


premature end of file while expecting DS line for read
ace file = 34-9EST.out.ace

Does anyone know how to solve this problems? thanks !

my sequence file is a multiple fasta file, I used this command to generate the ace file:

./phrap 34-9EST.out -new_ace > 34-9test.out
dingkai0564 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 04:00 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO