something wrong when using consed

dingkai0564 · 08-25-2011, 01:05 AM

when I use consed to display ace file generated by phrap one error happens:

The error is :

exception thrown: ace file error detected from source file parseAceFile.cpp at 2368
Error in file 34-9EST.out.ace at line 1736. Line:

premature end of file while expecting DS line for read

ace file: 34-9EST.out.ace
Version 20.0 (101012)
ace file error detected from source file parseAceFile.cpp at 2368
Error in file 34-9EST.out.ace at line 1736. Line:

premature end of file while expecting DS line for read
ace file = 34-9EST.out.ace

Does anyone know how to solve this problems? thanks !

my sequence file is a multiple fasta file, I used this command to generate the ace file:

./phrap 34-9EST.out -new_ace > 34-9test.out

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08-25-2011, 01:05 AM	#1
dingkai0564 Member Location: lasvegas Join Date: Nov 2010 Posts: 10	something wrong when using consed when I use consed to display ace file generated by phrap one error happens: The error is : exception thrown: ace file error detected from source file parseAceFile.cpp at 2368 Error in file 34-9EST.out.ace at line 1736. Line: premature end of file while expecting DS line for read ace file: 34-9EST.out.ace Version 20.0 (101012) ace file error detected from source file parseAceFile.cpp at 2368 Error in file 34-9EST.out.ace at line 1736. Line: premature end of file while expecting DS line for read ace file = 34-9EST.out.ace Does anyone know how to solve this problems? thanks ! my sequence file is a multiple fasta file, I used this command to generate the ace file: ./phrap 34-9EST.out -new_ace > 34-9test.out