Are there examples of bowtie2 ref file (used for indexing with bowtie2-build) and the gtf file that matches that, so I can use them as standard for my mapping?
I am having trouble in creating the bowtie index file that matches the GTF file for a specific cytoband of the human genome..
Also, if you guys have any comments on narrowing down the region of interest I'd appreciate.. (I am currently doing to test my files as it's my first time doing these analyses)
I am having trouble in creating the bowtie index file that matches the GTF file for a specific cytoband of the human genome..
Also, if you guys have any comments on narrowing down the region of interest I'd appreciate.. (I am currently doing to test my files as it's my first time doing these analyses)
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