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Old 03-26-2015, 07:20 AM   #1
Marianna Goldrick
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Location: Austin Tx

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Default porcine 28S rRNA sequence?

Does anyone know the Accn # for pig/porcine/sus scrofa complete 28S rRNA sequence? We can only find partial sequences in the NCBI database. Thanks!
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Old 03-26-2015, 10:00 AM   #2
cliffbeall
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One idea might be going to the pig genome page, clicking the "BLAST genome" link at upper right and blasting with human 28S? Sometimes rRNAs don't get annotated for some reason.

http://www.ncbi.nlm.nih.gov/genome?term=sus%20scrofa

Last edited by cliffbeall; 03-26-2015 at 10:01 AM. Reason: removed "well"
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Old 03-26-2015, 12:17 PM   #3
Marianna Goldrick
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Default porcine 28S rRNA Accn #

Thanks that was very useful. Found Accn# for an alignment covering 87% of human 28S, which is about the best we can do I guess.
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