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Old 07-21-2011, 07:52 AM   #1
chrisbala
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Location: North Carolina

Join Date: Jan 2010
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Default DESeq getVarianceStabilizedData

Hi everyone,

I'm using DEseq (Developmental version) on MAC OSX.

I'm trying to use the getVarianceStabilizedData function and am getting an error:

Error in getVarianceStabilizedData(cds) :
could not find function "estimateVarianceFunctionForMatrix"

Is anyone else having this trouble? Any solutions?

Thanks!
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Old 07-21-2011, 12:34 PM   #2
Simon Anders
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Location: Heidelberg, Germany

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Default

Hi Chris,

currently, there is quite some development going on in the developmental version. Maybe I accidently broke something with this week's changes. Can you sent me all your commands, so I can try myself?

Simon
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Old 07-21-2011, 02:24 PM   #3
chrisbala
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Default Vsd

Hi Simon,

I just emailed you my commands. Let me know if you need further info.

Thanks!
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