I am mapping contig sequences with plant database (size 2 GB). I am using tblastx and blastx search tool. Can anyone suggest what parameter for blastx/tblastx i should use for mapping with database?. I am having about 1 million contig sequences.
parameter in case for e value, length to be covered by query sequence etc.
parameter in case for e value, length to be covered by query sequence etc.
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