Hi,
I have searched the SOAP website and read the paper but I cant find a description for all the columns in the ouput.
Col1 = Read Seq_ID
Col2 = Read Sequence
Col3 = Read Sequence Quality
Col4 = ? I have the digit 1 here
Col5 = ? I have the letter 'a' here
Col6 = Read Length
Col7 = Strand
Col8 = Reference Seq_ID
Col9 = Position of start of read alignment
Col10= 0/1/2 - I think this is the number of mismatches?
Col11= base change - cant work out this out eg G->10C7
Can anyone fill in the blanks for me?
Regards
Aengus
I have searched the SOAP website and read the paper but I cant find a description for all the columns in the ouput.
Col1 = Read Seq_ID
Col2 = Read Sequence
Col3 = Read Sequence Quality
Col4 = ? I have the digit 1 here
Col5 = ? I have the letter 'a' here
Col6 = Read Length
Col7 = Strand
Col8 = Reference Seq_ID
Col9 = Position of start of read alignment
Col10= 0/1/2 - I think this is the number of mismatches?
Col11= base change - cant work out this out eg G->10C7
Can anyone fill in the blanks for me?
Regards
Aengus
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