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Old 03-10-2010, 03:13 AM   #1
gavin.oliver
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Default RNA-Seq & SNP/INDEL Analysis of Illumina GA Reads

Hi all,


Just wondering if I could get some quick software recommendations for said applications?

(From alignment to visualisation / commercial or non-commercial)

Thanks,

Gavin
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Old 03-10-2010, 10:40 AM   #2
bioinfosm
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tophat/cufflinks for rna-seq and maq or bwa for snp/indel

this post would be helpful for you: http://seqanswers.com/forums/showthread.php?t=43
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