samtools mpileup -C50 -I -ugf -R myReference.fa myInput.bam | bcftools view -bvcg - > samtoolsSNPs.raw.bcf
[fai_load] build FASTA index.
open: No such file or directory
[_razf_open] fail to open -R
[fai_build] fail to open the FASTA file -R
[fai_load] fail to open FASTA index.
[afs] 0:0.000
I checked for more than one time to make sure that I have the reference.fa.fai and reference.dict files. So I donot know why the error still shows up.
Any idea?
[fai_load] build FASTA index.
open: No such file or directory
[_razf_open] fail to open -R
[fai_build] fail to open the FASTA file -R
[fai_load] fail to open FASTA index.
[afs] 0:0.000
I checked for more than one time to make sure that I have the reference.fa.fai and reference.dict files. So I donot know why the error still shows up.
Any idea?
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